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Voxelmorph_Head_CT/outputs/preprocessed/patient1_neck_alignment.json

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{
"fixed_input_path": "outputs/nifti/patient1_fixed.nii.gz",
"moving_input_path": "outputs/nifti/patient1_moving.nii.gz",
"fixed_output_path": "outputs/preprocessed/patient1_fixed_preprocessed.nii.gz",
"moving_output_path": "outputs/preprocessed/patient1_moving_preprocessed.nii.gz",
"fixed_resampled_shape_xyz": [
288,
288,
317
],
"moving_resampled_shape_xyz": [
331,
331,
334
],
"target_shape_xyz": [
320,
320,
352
],
"target_spacing_xyz": [
1.0,
1.0,
1.0
],
"fixed_neck_center_index_xyz": [
143.0,
160.5,
159.5
],
"moving_neck_center_index_xyz": [
164.5,
195.0,
170.0
],
"fixed_neck_center_world_mm": [
30.733566284179688,
-50.513214111328125,
-633.6527099609375
],
"moving_neck_center_world_mm": [
43.7132568359375,
-12.3245849609375,
-656.634033203125
],
"moving_translation_mm": [
-12.979690551757812,
-38.188629150390625,
22.9813232421875
],
"body_threshold_hu": -500.0,
"foreground_percentiles": [
2.0,
98.0
],
"method": "neck-mask-centroid-translation"
}