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文档润色流和知识库构建流/claude-scholar-upstream/skills/nature-data/references/fair-metadata-checklist.md

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+# FAIR Metadata Checklist
+
+Use this file to audit whether a dataset deposit is findable, accessible, interoperable, and
+reusable enough for a Nature-style submission.
+
+## Quick FAIR test
+
+| Principle | Practical check |
+|---|---|
+| Findable | Dataset has a persistent identifier, rich title/abstract/keywords, searchable repository record, and metadata that names the data identifier. |
+| Accessible | Identifier resolves through a standard protocol; access conditions are explicit; metadata stay public even if data are restricted. |
+| Interoperable | Files use community formats where possible; metadata use shared vocabulary, units, identifiers, and qualified links to related data/code/publication. |
+| Reusable | Licence, provenance, methods, variables, quality-control notes, version, and community-standard metadata are clear enough for reuse. |
+
+## DataCite core fields
+
+Mandatory fields commonly expected for DOI-style dataset records:
+
+- Identifier
+- Creator
+- Title
+- Publisher / repository
+- Publication year
+- Resource type
+
+Strongly recommended when available:
+
+- contributor and role
+- description / abstract
+- subject keywords
+- funding reference
+- related identifiers: manuscript preprint/article, code repository, protocol, previous dataset
+- version
+- licence / rights
+- geolocation or temporal coverage for spatial/temporal data
+- language
+
+## Dataset README template
+
+```text
+# [Dataset title]
+
+## Summary
+[One-paragraph description of what the dataset contains and which manuscript results it supports.]
+
+## Files
+- [filename]: [contents, format, size, related figure/table]
+
+## Variables and units
+[Column/field name] | [definition] | [unit] | [allowed values/missing-value code]
+
+## Methods and provenance
+[How data were generated, collected, transformed, filtered, normalised, or aggregated.]
+
+## Software and environment
+[Software, package versions, scripts, notebooks, operating system or instrument software when relevant.]
+
+## Access and licence
+[Licence, access restrictions, data-use agreement, embargo, or controlled-access process.]
+
+## Citation
+[Preferred dataset citation.]
+```
+
+## File organization
+
+- Use stable, descriptive filenames instead of local shorthand.
+- Keep raw and processed data separate.
+- Include a manifest for archives or large multi-file deposits.
+- Map source data to exact figure panels and table numbers.
+- Preserve units in column names or data dictionaries, not only in manuscript captions.
+- Record missing-value codes and filtering decisions.
+- Include checksums for large or critical files when the repository does not generate them.
+
+## Provenance prompts
+
+Ask the author:
+
+- What instrument, survey, simulation, database, or processing pipeline produced each file?
+- Which script or notebook converts raw data into each figure or statistical table?
+- Which samples, time points, conditions, or participants were excluded, and why?
+- What version of each third-party dataset was used?
+- Are there licences, consent forms, data-use agreements, or ethics approvals that limit reuse?
+- Has any data been transformed in a way that prevents reconstruction of the raw values?
+
+## Licence guidance
+
+- Prefer a standard open licence when data can be public.
+- Use the repository's licence field rather than only writing licence text in the manuscript.
+- Use CC0 or CC-BY-style terms only when appropriate for the data and institution.
+- Do not apply an open licence to third-party or participant data unless the authors hold the right
+  to do so.
+- For code, use a software licence and archive a release when possible.
+
+## Final audit
+
+Block submission until these are resolved:
+
+- no Data Availability statement for original research
+- no identifier or stable access route for data supporting central conclusions
+- sensitive data restriction without access procedure
+- third-party data with no source or permission route
+- public dataset with no licence or README
+- claim that data are in the paper when figure source data are absent
+- mismatch between manuscript statement, repository record, and supplementary files