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Add DICOM UPP registration workspace

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Codex
2026-05-28 11:58:59 +08:00
parent 07df6ce446
commit cb18aabb4d
19 changed files with 5644 additions and 1 deletions
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2
数据库Web可视化/.env.example
View File

@@ -8,7 +8,9 @@ PACS_SUMMARY_TABLE=pacs_dicom_study_summaries
PACS_ANNOTATION_TABLE=pacs_dicom_series_annotations
UPP_ASSET_TABLE=upp_exam_assets
UPP_STL_TABLE=upp_stl_files
REGISTRATION_TABLE=dicom_upp_registrations
VISUALIZER_USER_TABLE=db_visualizer_users
VISUALIZER_ADMIN_USER=admin
VISUALIZER_ADMIN_PASSWORD=123456
PACS_VIEWER_URL=http://127.0.0.1:8107
REGISTRATION_URL=http://127.0.0.1:8109

63
数据库Web可视化/app.py
View File

@@ -35,10 +35,12 @@ PACS_SUMMARY_TABLE = os.getenv("PACS_SUMMARY_TABLE", "pacs_dicom_study_summaries
PACS_ANNOTATION_TABLE = os.getenv("PACS_ANNOTATION_TABLE", "pacs_dicom_series_annotations")
UPP_ASSET_TABLE = os.getenv("UPP_ASSET_TABLE", "upp_exam_assets")
UPP_STL_TABLE = os.getenv("UPP_STL_TABLE", "upp_stl_files")
REGISTRATION_TABLE = os.getenv("REGISTRATION_TABLE", "dicom_upp_registrations")
USER_TABLE = os.getenv("VISUALIZER_USER_TABLE", "db_visualizer_users")
WEB_ADMIN_USER = os.getenv("VISUALIZER_ADMIN_USER", "admin")
WEB_ADMIN_PASSWORD = os.getenv("VISUALIZER_ADMIN_PASSWORD", "123456")
PACS_VIEWER_URL = os.getenv("PACS_VIEWER_URL", "http://127.0.0.1:8107")
REGISTRATION_URL = os.getenv("REGISTRATION_URL", "http://127.0.0.1:8109")
IDENT_RE = re.compile(r"^[A-Za-z_][A-Za-z0-9_]*$")
CJK_RE = re.compile(r"[\u3400-\u9fff]")
@@ -56,6 +58,7 @@ PACS_SUMMARY_TABLE_SQL = ident(PACS_SUMMARY_TABLE)
PACS_ANNOTATION_TABLE_SQL = ident(PACS_ANNOTATION_TABLE)
UPP_ASSET_TABLE_SQL = ident(UPP_ASSET_TABLE)
UPP_STL_TABLE_SQL = ident(UPP_STL_TABLE)
REGISTRATION_TABLE_SQL = ident(REGISTRATION_TABLE)
USER_TABLE_SQL = ident(USER_TABLE)
app = FastAPI(title="DICOM UPP Database Visualizer")
@@ -247,6 +250,38 @@ def ensure_user_table() -> None:
)
def ensure_registration_table() -> None:
run_psql(
f"""
CREATE TABLE IF NOT EXISTS public.{REGISTRATION_TABLE_SQL} (
id bigserial PRIMARY KEY,
ct_number text NOT NULL,
series_instance_uid text NOT NULL DEFAULT '',
series_description text NOT NULL DEFAULT '',
algorithm_model text NOT NULL DEFAULT '',
stl_family text NOT NULL DEFAULT '',
view_mode text NOT NULL DEFAULT 'family',
selected_stl_files jsonb NOT NULL DEFAULT '[]'::jsonb,
transform jsonb NOT NULL DEFAULT '{{}}'::jsonb,
dicom_reference jsonb NOT NULL DEFAULT '{{}}'::jsonb,
model_reference jsonb NOT NULL DEFAULT '{{}}'::jsonb,
segmentation jsonb NOT NULL DEFAULT '{{}}'::jsonb,
notes text NOT NULL DEFAULT '',
locked boolean NOT NULL DEFAULT false,
locked_by text,
locked_at timestamptz,
updated_by text NOT NULL DEFAULT 'admin',
created_at timestamptz NOT NULL DEFAULT now(),
updated_at timestamptz NOT NULL DEFAULT now(),
UNIQUE (ct_number, series_instance_uid, algorithm_model, stl_family)
);
CREATE INDEX IF NOT EXISTS idx_{REGISTRATION_TABLE_SQL}_ct ON public.{REGISTRATION_TABLE_SQL}(ct_number);
CREATE INDEX IF NOT EXISTS idx_{REGISTRATION_TABLE_SQL}_locked ON public.{REGISTRATION_TABLE_SQL}(locked);
""",
timeout=10,
)
def fetch_user(username: str) -> dict[str, Any] | None:
ensure_user_table()
rows = pg_json_rows(
@@ -281,6 +316,7 @@ def admin_user(user: dict[str, str] = Depends(current_user)) -> dict[str, str]:
def startup() -> None:
try:
ensure_user_table()
ensure_registration_table()
except Exception:
pass
@@ -488,6 +524,16 @@ def relation_cte() -> str:
LEFT JOIN s_segments ON s_segments.ct_key = s_raw.ct_key
GROUP BY s_raw.ct_key
),
r AS (
SELECT
upper(ct_number) AS ct_key,
count(*)::int AS registration_count,
count(DISTINCT series_instance_uid) FILTER (WHERE series_instance_uid <> '')::int AS registered_series,
count(*) FILTER (WHERE locked)::int AS locked_count,
max(updated_at) AS registration_updated_at
FROM public.{REGISTRATION_TABLE_SQL}
GROUP BY upper(ct_number)
),
keys AS (
SELECT ct_key FROM p
UNION
@@ -573,6 +619,10 @@ def relation_cte() -> str:
s.updated_at AS stl_updated_at,
COALESCE(s.stl_asset_count, 0) AS stl_asset_count,
COALESCE(s.stl_assets, '[]'::jsonb) AS stl_assets,
COALESCE(r.registration_count, 0)::int AS registration_count,
COALESCE(r.registered_series, 0)::int AS registered_series,
COALESCE(r.locked_count, 0)::int AS locked_count,
r.registration_updated_at,
CASE
WHEN COALESCE(NULLIF(p.source_patient_name, ''), NULLIF(p.patient_name_dicom, '')) IS NULL
OR NULLIF(u.patient_name, '') IS NULL THEN ''
@@ -586,6 +636,7 @@ def relation_cte() -> str:
LEFT JOIN a_labels ON a_labels.ct_number = p.ct_number
LEFT JOIN u ON u.ct_key = k.ct_key
LEFT JOIN s ON s.ct_key = k.ct_key
LEFT JOIN r ON r.ct_key = k.ct_key
)
"""
@@ -683,6 +734,7 @@ def settings(user: dict[str, str] = Depends(admin_user)) -> dict[str, Any]:
return {
"user": user,
"viewer_url": PACS_VIEWER_URL,
"registration_url": REGISTRATION_URL,
"users": rows,
"database": {"host": PGHOST, "port": PGPORT, "database": PGDATABASE},
"tables": {
@@ -691,6 +743,7 @@ def settings(user: dict[str, str] = Depends(admin_user)) -> dict[str, Any]:
"dicom_annotations": PACS_ANNOTATION_TABLE,
"upp_assets": UPP_ASSET_TABLE,
"upp_stl": UPP_STL_TABLE,
"registration": REGISTRATION_TABLE,
},
}
@@ -750,6 +803,7 @@ def status(user: dict[str, str] = Depends(current_user)) -> dict[str, Any]:
ok, message = db_available()
counts: dict[str, Any] = {}
if ok:
ensure_registration_table()
rows = pg_json_rows(
f"""
{relation_cte()}
@@ -764,6 +818,10 @@ def status(user: dict[str, str] = Depends(current_user)) -> dict[str, Any]:
count(*) FILTER (WHERE relation_status = 'pacs_only')::int AS pacs_only_count,
count(*) FILTER (WHERE relation_status = 'stl_only')::int AS stl_only_count,
count(*) FILTER (WHERE relation_status = 'list_only')::int AS list_only_count,
count(*) FILTER (WHERE registration_count > 0)::int AS registered_ct_count,
count(*) FILTER (WHERE locked_count > 0)::int AS locked_ct_count,
COALESCE(sum(registration_count), 0)::int AS registration_count,
COALESCE(sum(locked_count), 0)::int AS locked_registration_count,
count(*) FILTER (WHERE pacs_present AND COALESCE(completed, false) IS NOT TRUE)::int AS pending_dicom_count,
COALESCE(sum(CASE WHEN pacs_present THEN COALESCE(undetermined_series, 0) ELSE 0 END), 0)::int AS pending_dicom_series
FROM relation
@@ -774,12 +832,14 @@ def status(user: dict[str, str] = Depends(current_user)) -> dict[str, Any]:
return {
"database": {"ok": ok, "message": message, "host": PGHOST, "database": PGDATABASE},
"viewer_url": PACS_VIEWER_URL,
"registration_url": REGISTRATION_URL,
"tables": {
"dicom": PACS_TABLE,
"dicom_summary": PACS_SUMMARY_TABLE,
"dicom_annotations": PACS_ANNOTATION_TABLE,
"upp_assets": UPP_ASSET_TABLE,
"upp_stl": UPP_STL_TABLE,
"registration": REGISTRATION_TABLE,
},
"counts": counts,
}
@@ -795,6 +855,7 @@ def relations(
offset: int = Query(default=0, ge=0),
user: dict[str, str] = Depends(current_user),
) -> list[dict[str, Any]]:
ensure_registration_table()
where = relation_where(q, status, algorithm_model, dicom_part)
rows = pg_json_rows(
f"""
@@ -810,6 +871,7 @@ def relations(
body_parts, dicom_body_parts, dicom_annotation_labels, algorithm_models,
upp_asset_count, duplicate_model_asset_count, upp_assets, stl_asset_count, stl_assets,
segment_categories, segment_families,
registration_count, registered_series, locked_count, registration_updated_at,
pacs_updated_at, upp_updated_at, stl_updated_at
FROM relation
{where}
@@ -829,6 +891,7 @@ def relations(
@app.get("/api/relations/{ct_number}")
def relation_detail(ct_number: str, user: dict[str, str] = Depends(current_user)) -> dict[str, Any]:
ensure_registration_table()
ct_key = normalize_ct(ct_number)
if not ct_key:
raise HTTPException(status_code=400, detail="invalid CT number")

45
数据库Web可视化/static/app.js
View File

@@ -8,6 +8,7 @@ const app = {
algorithmModel: "",
dicomPart: "",
viewerUrl: "http://127.0.0.1:8107",
registrationUrl: "http://127.0.0.1:8109",
searchTimer: null,
offset: 0,
limit: 20,
@@ -171,6 +172,7 @@ function assetSummary(row) {
function setDbStatus(data) {
app.viewerUrl = data.viewer_url || app.viewerUrl;
app.registrationUrl = data.registration_url || app.registrationUrl;
const pill = $("dbStatus");
if (data.database?.ok) {
pill.textContent = `${data.database.database} 已连接`;
@@ -187,6 +189,7 @@ function renderMetrics(counts = {}) {
["DICOM", counts.pacs_count],
["仅 DICOM", counts.pacs_only_count],
["仅 STL", counts.stl_only_count],
["已配准", counts.registered_ct_count],
];
$("metrics").innerHTML = items
.map(([label, value]) => `<div class="metric"><span>${escapeHtml(label)}</span><strong>${Number(value || 0)}</strong></div>`)
@@ -203,6 +206,7 @@ function cardTitle(row) {
`UPP患者：${row.upp_patient_name || "无"}`,
`重建模型：${row.algorithm_model || "无"}`,
`部位标注：${annotationLabels(row).join("、") || "无"}`,
`配准：${Number(row.registered_series || 0)} 序列，${Number(row.locked_count || 0)} 锁定`,
].join("\n");
}
@@ -237,6 +241,11 @@ function renderList() {
</div>
<div class="card-status">
<i class="mini-badge ${escapeHtml(row.relation_status)}">${escapeHtml(statusLabel(row.relation_status))}</i>
${
Number(row.registration_count || 0)
? `<small class="registration-mini" title="${Number(row.registration_count || 0)} 条配准记录，${Number(row.locked_count || 0)} 条锁定">${Number(row.registered_series || 0)} 已配准</small>`
: `<small class="registration-mini pending">未配准</small>`
}
${
Number(row.duplicate_model_asset_count || 0)
? `<small class="name-check-warning" title="同一CT同一算法模型只能对应一个STL，已按规则保留一组">${Number(row.duplicate_model_asset_count)} 组重复</small>`
@@ -290,16 +299,39 @@ function viewerBaseUrl() {
}
}
function registrationBaseUrl() {
try {
const url = new URL(app.registrationUrl || `${location.protocol}//${location.hostname}:8109`, location.href);
if (["127.0.0.1", "localhost", "0.0.0.0"].includes(url.hostname) && !["127.0.0.1", "localhost"].includes(location.hostname)) {
url.hostname = location.hostname;
}
url.protocol = location.protocol;
return url.toString().replace(/\/$/, "");
} catch (_) {
return `${location.protocol}//${location.hostname}:8109`;
}
}
function dicomViewerUrl(row = app.active) {
if (!row?.pacs_ct_number) return "";
return `${viewerBaseUrl()}/?ct_number=${encodeURIComponent(row.pacs_ct_number)}`;
}
function registrationViewerUrl(row = app.active) {
const ct = row?.pacs_ct_number || row?.ct_key;
if (!ct) return "";
return `${registrationBaseUrl()}/?ct_number=${encodeURIComponent(ct)}`;
}
function updateOpenDicomButton() {
const button = $("openDicomBtn");
const url = dicomViewerUrl();
button.disabled = !url;
button.title = url || "当前记录没有 DICOM 检查号";
const registrationButton = $("openRegistrationBtn");
const registration = registrationViewerUrl();
registrationButton.disabled = !registration;
registrationButton.title = registration || "当前记录没有可配准 CT 号";
}
function clearDetail() {
@@ -349,6 +381,7 @@ function renderDetail(row) {
["标注", `${Number(row.annotated_series || 0)} 已标注`],
["完成", row.completed ? "已完成" : "待处理"],
["部位标注", labels.join("、")],
["配准状态", row.registration_count ? `${Number(row.registered_series || 0)} 个序列已配准 / ${Number(row.locked_count || 0)} 条锁定` : "未配准"],
]);
renderDl("stlDetails", [
@@ -370,6 +403,7 @@ function renderDetail(row) {
["目录", row.processed_stl_dir],
["分割分类", uniq(asList(row.segment_categories)).join("、")],
["更新时间", fmtDate(row.stl_updated_at || row.upp_updated_at)],
["配准更新时间", fmtDate(row.registration_updated_at)],
]);
updateOpenDicomButton();
@@ -597,6 +631,15 @@ function openViewerHome() {
window.open(viewerBaseUrl(), "_blank", "noopener");
}
function openRegistrationViewer() {
const url = registrationViewerUrl();
if (url) window.open(url, "_blank", "noopener");
}
function openRegistrationHome() {
window.open(registrationBaseUrl(), "_blank", "noopener");
}
function wire() {
$("loginForm").addEventListener("submit", login);
$("logoutBtn").addEventListener("click", logout);
@@ -604,7 +647,9 @@ function wire() {
$("backToViewer").addEventListener("click", showViewer);
$("refreshBtn").addEventListener("click", refreshAll);
$("viewerHomeBtn").addEventListener("click", openViewerHome);
$("registrationHomeBtn").addEventListener("click", openRegistrationHome);
$("openDicomBtn").addEventListener("click", openDicomViewer);
$("openRegistrationBtn").addEventListener("click", openRegistrationViewer);
$("relationList").addEventListener("scroll", () => {
const list = $("relationList");
if (list.scrollTop + list.clientHeight >= list.scrollHeight - 140) loadRelations(false);

6
数据库Web可视化/static/index.html
View File

@@ -17,6 +17,7 @@
</div>
<div class="top-actions">
<button id="viewerHomeBtn" class="dark-btn" type="button">进入阅片系统</button>
<button id="registrationHomeBtn" class="dark-btn" type="button">进入配准系统</button>
<span id="dbStatus" class="status-pill">数据库</span>
<button id="refreshBtn" class="dark-btn" type="button">刷新</button>
<span id="userBadge" class="user-badge">未登录</span>
@@ -101,7 +102,10 @@
<article class="panel detail-card">
<div class="detail-title">
<h3>DICOM 阅片分类系统</h3>
<button id="openDicomBtn" class="link-btn" type="button">打开阅片系统</button>
<div class="detail-actions">
<button id="openDicomBtn" class="link-btn" type="button">打开阅片系统</button>
<button id="openRegistrationBtn" class="link-btn" type="button">打开配准</button>
</div>
</div>
<dl id="pacsDetails"></dl>
</article>

38
数据库Web可视化/static/styles.css
View File

@@ -194,6 +194,12 @@ button {
background: linear-gradient(180deg, rgba(17, 61, 70, 0.92), rgba(9, 30, 42, 0.98));
}
.top-actions #registrationHomeBtn {
border-color: rgba(240, 181, 78, 0.62);
color: #ffe3ad;
background: linear-gradient(180deg, rgba(66, 47, 17, 0.92), rgba(34, 23, 9, 0.98));
}
.primary-btn,
.link-btn {
height: 34px;
@@ -229,6 +235,11 @@ button {
background: rgba(25, 212, 194, 0.14);
}
.top-actions #registrationHomeBtn:hover {
border-color: var(--amber);
background: rgba(240, 181, 78, 0.14);
}
.layout {
height: calc(100vh - 66px);
display: grid;
@@ -451,6 +462,27 @@ button {
white-space: nowrap;
}
.registration-mini {
max-width: 94px;
padding: 2px 7px;
overflow: hidden;
border: 1px solid rgba(25, 212, 194, 0.46);
border-radius: 999px;
color: #baf8ee;
background: rgba(25, 212, 194, 0.08);
font-size: 11px;
font-weight: 700;
line-height: 1.45;
text-overflow: ellipsis;
white-space: nowrap;
}
.registration-mini.pending {
border-color: rgba(240, 181, 78, 0.52);
color: #ffe0a3;
background: rgba(240, 181, 78, 0.08);
}
.mini-badge {
flex: 0 0 auto;
padding: 2px 7px;
@@ -636,6 +668,12 @@ button {
margin-bottom: 12px;
}
.detail-actions {
display: flex;
gap: 8px;
align-items: center;
}
.detail-title h3 {
margin: 0;
}